fix(scanner): compare model roots by identity, not by spelling (#1146)

ComfyUI hands its model folders over in the host's own spelling --
`utils/extra_config.py` runs every configured path through `os.path.normpath()`,
which is all backslashes on Windows, and `main.py` registers `<output>/loras`
unconditionally for its save nodes. `Config` kept that spelling verbatim while
`_prepare_*_paths()` normalized the live root lists to forward slashes, and the
scanner compared the two as raw strings. On Windows every configured root
therefore looked like a root that was not in the live list: the Refresh menu
listed each directory twice (the twin showing "0 models"), the completion toast
claimed reachable roots were "currently inaccessible" and kept their whole cache
count as `kept_unreachable`, and the settings sync persisted host-registered
directories that were never created.

The duplication was not only cosmetic. `_UnreachablePaths.add()` normalizes the
prefix it is given, so the configured twin of a live root registered exactly the
live root's prefix as unreadable: in the prune phase every cached-but-missing
entry under it matched and was "kept", so models deleted from disk were never
removed from the cache again.

* `py/utils/root_paths.py` holds the single `normalize_root_identity()`
  (separator style, redundant/trailing separators, and case where the filesystem
  folds it: whole paths on Windows, drive letters everywhere). `config.py` and
  `settings_manager.py` each carried a private copy and `model_scanner.py`
  compared raw strings.
* `ModelScanner` compares root identities in `get_configured_model_roots()`,
  `describe_model_roots()` (dedupe + `available`), the reconcile's
  `configured_only` list and the `ReconcileScope.roots` membership test, so one
  directory is one root whatever the host called it. `_normalized_root_prefix()`
  is built on the same identity, and an empty prefix no longer matches every
  path.
* A configured root that never made it into the live list is reported only while
  it still holds cached entries -- in the menu and in `skipped_roots` /
  `unavailable_paths` alike. A directory that neither exists nor was ever scanned
  has nothing to keep, so `<output>/loras` stops being an unavailable root.
* The startup sync drops saved roots that neither exist nor hold cached entries
  (`PersistentModelCache.roots_with_cached_entries()`, one scan per model type,
  separator-agnostic and wildcard-escaped). A root named by the library's
  `default_*_root` is kept even when empty: dropping it would let the next boot
  "repair" the default onto another root. When the cache cannot be consulted,
  every root is kept.
* `GET /scan?roots=` validates requested roots by identity too, so the browser
  extension or a script passing the spelling settings.json holds selects the root
  instead of answering 400 "Unknown model root(s)".

Verified: 8 of the new tests fail against the pre-fix source (checked with the
fix stashed); 3798 passed, 7 skipped, 11 deselected. The probe costs 71ms for a
100k-model library with seven missing roots (357ms when probing root by root).

py/config.py

@@ -4,7 +4,6 @@
 # import cycles. Breaking them would require an architectural refactor.
 import os
 import platform
-import posixpath
 import threading
 from pathlib import Path
 import folder_paths  # pyright: ignore[reportMissingImports]
@@ -20,6 +19,7 @@ from .utils.cache_paths import CacheType, get_cache_file_path, get_legacy_cache_
 from .utils.constants import (
     OTHER_MODEL_FOLDER_SUBTYPES,
 )
+from .utils.root_paths import normalize_root_identity
 from .utils.settings_paths import (
     ensure_settings_file,
     get_settings_dir,
@@ -34,14 +34,15 @@ standalone_mode = (
 
 logger = logging.getLogger(__name__)
 
-
-def _normalize_root_identity(path: str) -> str:
-    """Normalize a root path for comparisons across slash styles."""
-
-    normalized = posixpath.normpath(path.strip().replace("\\", "/"))
-    if len(normalized) >= 2 and normalized[1] == ":":
-        return normalized.lower()
-    return normalized
+# Saved folder-path keys mapped to the model type whose cache can tell whether a
+# root that is missing right now is still worth keeping (issue #1146). The
+# checkpoint page holds both checkpoints and unet roots.
+_CACHE_MODEL_TYPE_BY_FOLDER_KEY = {
+    "loras": "lora",
+    "checkpoints": "checkpoint",
+    "unet": "checkpoint",
+    "embeddings": "embedding",
+}
 
 
 def _append_new_paths(current: List[str], candidates: Iterable[str]) -> List[str]:
@@ -52,11 +53,11 @@ def _append_new_paths(current: List[str], candidates: Iterable[str]) -> List[str
     to the root *order* would move user data.
     """
     merged = list(current)
-    seen = {_normalize_root_identity(path) for path in merged}
+    seen = {normalize_root_identity(path) for path in merged}
     for path in candidates:
         if not isinstance(path, str) or not path.strip():
             continue
-        identity = _normalize_root_identity(path)
+        identity = normalize_root_identity(path)
         if identity in seen:
             continue
         seen.add(identity)
@@ -78,15 +79,15 @@ def _resolve_valid_default_root(
         stripped = path.strip()
         if not stripped:
             continue
-        identity = _normalize_root_identity(stripped)
+        identity = normalize_root_identity(stripped)
         if identity in seen:
             continue
         seen.add(identity)
         fallback_paths.append(stripped)
 
-    allowed = {_normalize_root_identity(path) for path in fallback_paths}
+    allowed = {normalize_root_identity(path) for path in fallback_paths}
 
-    if current and _normalize_root_identity(current) in allowed:
+    if current and normalize_root_identity(current) in allowed:
         return current
 
     if not valid_paths:
@@ -320,6 +321,77 @@ class Config:
                 "Could not load extra paths from library settings: %s", exc
             )
 
+    def _drop_missing_roots_without_cache(
+        self,
+        folder_paths_map: Dict[str, List[str]],
+        default_roots: Mapping[str, str],
+    ) -> Dict[str, List[str]]:
+        """Drop saved roots that neither exist nor hold cached entries (issue #1146).
+
+        The startup sync persists what is *configured* rather than what is readable,
+        so a switched-off drive keeps its path (see ``save_folder_paths_to_settings``).
+        A directory the host registered without ever creating it -- ComfyUI adds
+        ``<output>/loras`` and friends for its save nodes whether or not they exist --
+        came along for the ride and stayed there as a permanently "unavailable" root.
+
+        A root that still holds cached entries is exactly the switched-off drive the
+        persistence exists for, so it is kept. A root named by the library's
+        ``default_*_root`` is kept even when it is empty: dropping it would let the
+        next boot repair the default onto another root.
+
+        Best effort: when the cache cannot be consulted, every root is kept.
+        """
+
+        try:
+            from .services.persistent_model_cache import get_persistent_cache
+
+            cache = get_persistent_cache()
+        except Exception as exc:  # pragma: no cover - defensive logging
+            logger.debug("Keeping every configured model root: %s", exc)
+            return folder_paths_map
+
+        protected = {
+            identity
+            for identity in (
+                normalize_root_identity(path) for path in default_roots.values()
+            )
+            if identity
+        }
+
+        filtered: Dict[str, List[str]] = {}
+        for key, paths in folder_paths_map.items():
+            missing = [path for path in paths if not os.path.exists(path)]
+            if not missing:
+                filtered[key] = list(paths)
+                continue
+
+            probe = [
+                path
+                for path in missing
+                if normalize_root_identity(path) not in protected
+            ]
+            try:
+                cached = cache.roots_with_cached_entries(
+                    _CACHE_MODEL_TYPE_BY_FOLDER_KEY.get(key, "other"), probe
+                )
+            except Exception as exc:
+                logger.debug(
+                    "Keeping every configured %s root (%s): %s", key, missing, exc
+                )
+                filtered[key] = list(paths)
+                continue
+
+            cached_ids = {normalize_root_identity(path) for path in cached}
+            filtered[key] = [
+                path
+                for path in paths
+                if os.path.exists(path)
+                or normalize_root_identity(path) in protected
+                or normalize_root_identity(path) in cached_ids
+            ]
+
+        return filtered
+
     def save_folder_paths_to_settings(self):
         """Persist ComfyUI-derived folder paths to the multi-library settings."""
         try:
@@ -533,9 +605,26 @@ class Config:
                 or self._should_activate_comfy_library(libraries, libraries_changed)
             )
 
+            # A root that the host registered but never created (and that holds no
+            # cached models) is not a library path: persisting it would bring it
+            # back as an unavailable root on every boot, and in standalone mode the
+            # saved paths are the only source of truth (issue #1146).
+            default_roots = {
+                "loras": default_lora_root
+                or comfy_library.get("default_lora_root", ""),
+                "checkpoints": default_checkpoint_root
+                or comfy_library.get("default_checkpoint_root", ""),
+                "unet": comfy_library.get("default_unet_root", ""),
+                "embeddings": default_embedding_root
+                or comfy_library.get("default_embedding_root", ""),
+            }
+            persisted_folder_paths = self._drop_missing_roots_without_cache(
+                target_folder_paths, default_roots
+            )
+
             settings_service.upsert_library(
                 "comfyui",
-                folder_paths=target_folder_paths,
+                folder_paths=persisted_folder_paths,
                 extra_folder_paths=extra_folder_paths,
                 default_lora_root=default_lora_root,
                 default_checkpoint_root=default_checkpoint_root,

py/routes/handlers/model_handlers.py

@@ -55,6 +55,7 @@ from ...utils.civitai_utils import resolve_license_payload
 from ...utils.file_utils import calculate_sha256
 from ...utils.metadata_manager import MetadataManager
 from ...utils.paid_access import is_early_access_deadline_active
+from ...utils.root_paths import normalize_root_identity
 from ...utils.sidecar_paths import get_metadata_path
 from ...utils.url_utils import relative_root_prefix
 
@@ -1170,7 +1171,18 @@ class ModelQueryHandler:
 
             if requested_roots:
                 configured = self._service.get_model_roots()
-                unknown = [root for root in requested_roots if root not in configured]
+                # Compare by identity, not by string: callers may pass the host's
+                # own spelling of a root (backslashes or a differently cased drive
+                # letter on Windows, as settings.json and ComfyUI show it), which
+                # names the same directory the live list holds forward-slashed.
+                known_roots = {
+                    normalize_root_identity(root) for root in configured
+                }
+                unknown = [
+                    root
+                    for root in requested_roots
+                    if normalize_root_identity(root) not in known_roots
+                ]
                 if unknown:
                     return web.json_response(
                         {"error": "Unknown model root(s)", "roots": unknown}, status=400

py/services/model_scanner.py

@@ -25,6 +25,7 @@ from ..utils.recipes_paths import (
     get_effective_recipes_dir,
     normalized_recipes_dir_key,
 )
+from ..utils.root_paths import normalize_root_identity
 from .model_cache import ModelCache
 from .model_hash_index import ModelHashIndex
 from .model_lifecycle_service import delete_model_artifacts, _require_path_in_library_roots
@@ -203,16 +204,33 @@ def _root_display_labels(roots: Sequence[str]) -> Dict[str, str]:
     return {root: _truncate_label(label) for root, label in labels.items()}
 
 
+def _root_identity(root: str) -> str:
+    """Comparable identity of a model root, folding the host's spelling (issue #1146).
+
+    The live root list is forward-slashed while ``Config`` keeps the configured
+    paths exactly as the host handed them over -- ComfyUI's ``os.path.normpath()``
+    output is all backslashes on Windows. Comparing the two as raw strings turns
+    one directory into two roots: a duplicated menu row, a bogus "unavailable"
+    report, and -- worse -- an unreachable prefix registered over a root the walk
+    just read, which stops deleted models from ever being pruned.
+    """
+    return normalize_root_identity(root)
+
+
 def _normalized_root_prefix(root: str) -> str:
     """Forward-slash root prefix used to attribute cached paths to a root."""
-    prefix = os.path.normpath(root).replace(os.sep, "/")
-    if not prefix.endswith("/"):
+    prefix = _root_identity(root)
+    if prefix and not prefix.endswith("/"):
         prefix += "/"
-    return prefix.lower() if _CASE_INSENSITIVE_PATHS else prefix
+    return prefix
 
 
 def _path_matches_prefix(path: str, prefix: str) -> bool:
     """Match a cached business path against a normalized scope prefix."""
+    if not prefix:
+        # An empty prefix would match every path; callers filter empty roots, so
+        # keep it inert instead of turning it into a catch-all.
+        return False
     candidate = path.lower() if _CASE_INSENSITIVE_PATHS else path
     return candidate.startswith(prefix)
 
@@ -332,7 +350,8 @@ def _count_cached_entries_for_prefixes(
     for path in cached_paths:
         candidate = path.lower() if case_insensitive else path
         for key, prefix in ordered:
-            if candidate.startswith(prefix):
+            # An empty prefix would claim every path; see _path_matches_prefix.
+            if prefix and candidate.startswith(prefix):
                 counts[key] += 1
                 break
     return counts
@@ -1621,8 +1640,9 @@ class ModelScanner:
         seen: Set[str] = set()
         for key in keys:
             for root in config.configured_roots_for(key):
-                if root and root not in seen:
-                    seen.add(root)
+                identity = _root_identity(root)
+                if identity and identity not in seen:
+                    seen.add(identity)
                     roots.append(root)
         return roots
 
@@ -1651,32 +1671,44 @@ class ModelScanner:
         roots: List[str] = []
         seen: Set[str] = set()
         for root in self.get_model_roots():
-            if not root or root in seen:
+            identity = _root_identity(root)
+            if not identity or identity in seen:
                 continue
-            seen.add(root)
+            seen.add(identity)
             roots.append(root)
 
         # Configured roots that are missing from the live list: their directory
         # did not exist when it was built (a drive switched off at startup).
-        # They are reported so the menu offers a row in both states instead of
-        # hiding the root until the process is restarted.
-        unavailable = [
-            root for root in self.get_configured_model_roots() if root not in seen
-        ]
+        # Compared by identity, never by string -- the live list is forward-slashed
+        # while Config keeps the host's own spelling, which is all backslashes on
+        # Windows (issue #1146). Only roots that still hold cached entries are
+        # reported: a path that neither exists nor was ever scanned has nothing to
+        # keep, and ComfyUI registers `<output>/loras` for its save nodes whether or
+        # not that directory is there.
+        candidates: List[str] = []
+        reported: Set[str] = set()
+        for root in self.get_configured_model_roots():
+            identity = _root_identity(root)
+            if not identity or identity in seen or identity in reported:
+                continue
+            reported.add(identity)
+            candidates.append(root)
 
-        labels = _root_display_labels(roots + unavailable)
         cached_paths = (
             {item.get('file_path', '') for item in self._cache.raw_data}
             if self._cache is not None
             else set()
         )
-        counts = _count_cached_entries_per_root(cached_paths, roots + unavailable)
+        counts = _count_cached_entries_per_root(cached_paths, roots + candidates)
+        unavailable = [root for root in candidates if counts.get(root, 0)]
+
+        labels = _root_display_labels(roots + unavailable)
         return [
             {
                 'path': root.replace(os.sep, '/'),
                 'label': labels[root],
                 'reachable': os.path.exists(root),
-                'available': root in seen,
+                'available': _root_identity(root) in seen,
                 'models': counts.get(root, 0),
             }
             for root in roots + unavailable
@@ -1801,25 +1833,37 @@ class ModelScanner:
             configured_roots: List[str] = []
             seen_roots: Set[str] = set()
             for root_path in self.get_model_roots():
-                if not root_path or root_path in seen_roots:
+                identity = _root_identity(root_path)
+                if not identity or identity in seen_roots:
                     continue
-                seen_roots.add(root_path)
+                seen_roots.add(identity)
                 configured_roots.append(root_path)
 
             # Configured roots that never made it into the live list (their
             # directory was missing when it was built). They are outside the scan
             # scope entirely — which is exactly why their cached entries survive
             # — so they only need reporting, and their labels must not collide
-            # with the live ones.
-            configured_only = [
-                root for root in self.get_configured_model_roots()
-                if root and root not in seen_roots
-            ]
+            # with the live ones. Identity, not string: the live list is
+            # forward-slashed while Config keeps the host's own spelling -- all
+            # backslashes on Windows -- and a raw compare would report every root
+            # twice and shadow it as unreachable (issue #1146).
+            configured_only: List[str] = []
+            for root in self.get_configured_model_roots():
+                identity = _root_identity(root)
+                if not identity or identity in seen_roots:
+                    continue
+                seen_roots.add(identity)
+                configured_only.append(root)
 
             all_labels = _root_display_labels(configured_roots + configured_only)
+            scope_root_ids = (
+                {_root_identity(root) for root in scope.roots}
+                if scope is not None and scope.roots is not None
+                else None
+            )
             scope_roots = [
                 root for root in configured_roots
-                if scope is None or scope.roots is None or root in scope.roots
+                if scope_root_ids is None or _root_identity(root) in scope_root_ids
             ]
             scope_folder = scope.folder if scope is not None else None
 
@@ -1853,7 +1897,12 @@ class ModelScanner:
                 )
                 for root_path, _prefix in folder_candidates:
                     kept = folder_counts.get(root_path, 0)
-                    if scope_folder is not None and not kept:
+                    # Only a root that still holds cached entries is reported --
+                    # and protected from pruning. A configured path that neither
+                    # exists nor was ever scanned has nothing to keep, and ComfyUI
+                    # registers `<output>/loras` for its save nodes even when that
+                    # directory is absent (issue #1146).
+                    if not kept:
                         continue
                     unreachable.add(root_path, 'root_unavailable', kept=kept)
                     skipped_roots.append({

py/services/persistent_model_cache.py

@@ -4,16 +4,33 @@ import os
 import sqlite3
 import threading
 from dataclasses import dataclass, field
-from typing import Any, Dict, List, Mapping, Optional, Sequence, Tuple
+from typing import Any, Dict, List, Mapping, Optional, Sequence, Set, Tuple
 
 from ..utils.cache_db import connect_cache_db
 from ..utils.cache_paths import CacheType, resolve_cache_path_with_migration
 from ..utils.file_lock import exclusive_lock
+from ..utils.root_paths import normalize_root_identity
 from .model_sources import normalize_metadata_source
 
 logger = logging.getLogger(__name__)
 
 
+def _like_prefix_pattern(identity: str) -> str:
+    """SQLite LIKE pattern matching every path inside *identity*.
+
+    ``%``/``_`` are legal characters in a path and ``\\`` is the escape character,
+    so all three are escaped. The separator is added only when the identity does not
+    already end in one, so a filesystem root (``/``) still matches everything below
+    it instead of only itself.
+    """
+
+    escaped = (
+        identity.replace("\\", "\\\\").replace("%", "\\%").replace("_", "\\_")
+    )
+    prefix = escaped if escaped.endswith("/") else f"{escaped}/"
+    return f"{prefix}%"
+
+
 @dataclass
 class PersistedCacheData:
     """Lightweight structure returned by the persistent cache."""
@@ -254,6 +271,61 @@ class PersistentModelCache:
             all_folders=all_folders,
         )
 
+    def roots_with_cached_entries(
+        self, model_type: str, roots: Sequence[str]
+    ) -> Set[str]:
+        """Return the subset of *roots* that hold at least one cached entry.
+
+        Used by the settings sync to tell a root that was registered but never
+        scanned -- ComfyUI registers ``<output>/loras`` for its save nodes whether
+        or not that directory exists -- from a real root whose drive happens to be
+        switched off: only the latter must keep its place in the saved library
+        paths (issue #1146). Paths are matched on their forward-slash identity, so
+        the host's own slash style does not matter.
+
+        Raises when the answer is unknown (a disabled cache, a missing database, an
+        unreadable file): the caller keeps every root in that case.
+        """
+
+        if not self.is_enabled():
+            raise RuntimeError("persistent model cache is disabled")
+
+        candidates: Dict[str, str] = {}
+        for root in roots:
+            identity = normalize_root_identity(root)
+            if identity:
+                candidates.setdefault(identity, root)
+        if not candidates:
+            return set()
+
+        matched: Set[str] = set()
+        # One scan per model type rather than one per root: the probe runs at
+        # startup for every configured root that is missing right now, which on
+        # Windows includes all of ComfyUI's `<output>/<type>` folders.
+        clause = "replace(file_path, '\\', '/') LIKE ? ESCAPE '\\'"
+        sql = (
+            "SELECT DISTINCT replace(file_path, '\\', '/') FROM models "
+            f"WHERE model_type = ? AND ({' OR '.join([clause] * len(candidates))})"
+        )
+        params: List[Any] = [model_type]
+        params.extend(_like_prefix_pattern(identity) for identity in candidates)
+
+        with self._db_lock:
+            conn = self._connect(readonly=True)
+            try:
+                rows = conn.execute(sql, params).fetchall()
+            finally:
+                conn.close()
+
+        for (cached_path,) in rows:
+            folded = normalize_root_identity(cached_path)
+            for identity, root in candidates.items():
+                prefix = identity if identity.endswith("/") else f"{identity}/"
+                if folded.startswith(prefix):
+                    matched.add(root)
+                    break
+        return matched
+
     def save_cache(self, model_type: str, raw_data: Sequence[Dict[str, Any]], hash_index: Dict[str, List[str]], excluded_models: Sequence[str], autov3_hash_index: Optional[Dict[str, List[str]]] = None, all_folders: Optional[Sequence[str]] = None) -> None:
         if not self.is_enabled():
             return

py/services/settings_manager.py

@@ -2,7 +2,6 @@ import asyncio
 import copy
 import json
 import os
-import posixpath
 import shutil
 import tempfile
 import logging
@@ -36,6 +35,7 @@ from ..utils.constants import (
     normalize_other_sub_types,
 )
 from ..utils.preview_selection import VALID_MATURE_BLUR_LEVELS
+from ..utils.root_paths import normalize_root_identity
 from ..utils.settings_paths import (
     APP_NAME,
     _portable_env_override,
@@ -156,15 +156,6 @@ DEFAULT_SETTINGS: Dict[str, Any] = {
 }
 
 
-def _normalize_root_identity(path: str) -> str:
-    """Normalize a root path for equality checks across slash styles."""
-
-    normalized = posixpath.normpath(path.strip().replace("\\", "/"))
-    if len(normalized) >= 2 and normalized[1] == ":":
-        return normalized.lower()
-    return normalized
-
-
 class SettingsManager:
     def __init__(self):
         self.settings_file = ensure_settings_file(logger)
@@ -1058,7 +1049,7 @@ class SettingsManager:
                 return False
 
             allowed_roots = self._get_allowed_roots(key)
-            if current and _normalize_root_identity(current) in allowed_roots:
+            if current and normalize_root_identity(current) in allowed_roots:
                 return False
 
             self.settings[setting_key] = primary_candidates[0]
@@ -1094,7 +1085,7 @@ class SettingsManager:
                 candidate_identities: set[str] = set()
                 for folder_key in OTHER_SUB_TYPE_FOLDER_KEYS.get(sub_type, []):
                     for candidate in self._get_valid_root_candidates(folder_key):
-                        identity = _normalize_root_identity(candidate)
+                        identity = normalize_root_identity(candidate)
                         if identity in candidate_identities:
                             continue
                         candidate_identities.add(identity)
@@ -1102,7 +1093,7 @@ class SettingsManager:
                 if not candidates:
                     continue
                 current = other_roots.get(sub_type, "")
-                if current and _normalize_root_identity(current) in candidate_identities:
+                if current and normalize_root_identity(current) in candidate_identities:
                     continue
                 other_roots[sub_type] = candidates[0]
                 if current:
@@ -1152,7 +1143,7 @@ class SettingsManager:
                 normalized = value.strip()
                 if not normalized:
                     continue
-                identity = _normalize_root_identity(normalized)
+                identity = normalize_root_identity(normalized)
                 if identity in seen:
                     continue
                 seen.add(identity)
@@ -1162,7 +1153,7 @@ class SettingsManager:
     def _get_allowed_roots(self, key: str) -> set[str]:
         """Return all valid roots for a model type, including extra roots."""
 
-        return {_normalize_root_identity(path) for path in self._get_valid_root_candidates(key)}
+        return {normalize_root_identity(path) for path in self._get_valid_root_candidates(key)}
 
     def _check_environment_variables(self) -> None:
         """Check for environment variables and update settings if needed"""

py/utils/root_paths.py

@@ -0,0 +1,36 @@
+"""Path identity helpers for model roots.
+
+ComfyUI hands its model folders over in whatever spelling the host uses --
+``os.path.normpath()`` output, which is all backslashes on Windows -- while LoRA
+Manager's own root lists and cached model paths are forward-slashed. Comparing
+the two spellings as raw strings makes one directory look like two roots, so every
+root identity check goes through :func:`normalize_root_identity` (issue #1146).
+"""
+
+from __future__ import annotations
+
+import os
+import posixpath
+
+
+def normalize_root_identity(path: str) -> str:
+    """Return the comparable identity of a model root path.
+
+    Folds the separator style (``\\`` and ``/`` are both accepted as separators,
+    because the host may spell a Windows path either way), redundant and trailing
+    separators, and the case where the filesystem does not distinguish it: Windows
+    compares whole paths case-insensitively, and every platform folds a drive
+    letter (``E:`` == ``e:``). Symlinks are never resolved -- business paths stay
+    business paths, matching the rest of the codebase.
+    """
+
+    if not isinstance(path, str):
+        return ""
+    candidate = path.strip()
+    if not candidate:
+        return ""
+
+    normalized = posixpath.normpath(candidate.replace("\\", "/"))
+    if os.name == "nt" or (len(normalized) >= 2 and normalized[1] == ":"):
+        return normalized.lower()
+    return normalized

tests/config/test_config_save_paths.py

@@ -968,3 +968,197 @@ def test_save_paths_keeps_configured_root_of_a_switched_off_drive(
     assert config_instance.loras_roots == [readable.replace("\\", "/")]
     # The user's default root survives because it is merely unavailable.
     assert fake_settings.payload["default_lora_root"] == switched_off.replace("\\", "/")
+
+
+# --- roots the host registered but never created (issue #1146) --------------
+
+
+class _FakePersistentCache:
+    """Stand-in for PersistentModelCache in the startup sync."""
+
+    def __init__(self, cached_roots=None, error: Exception | None = None):
+        self._cached_roots = cached_roots or {}
+        self._error = error
+        self.queries: List[tuple] = []
+
+    def roots_with_cached_entries(self, model_type: str, roots):
+        self.queries.append((model_type, list(roots)))
+        if self._error is not None:
+            raise self._error
+        known = {path.replace("\\", "/") for path in self._cached_roots.get(model_type, [])}
+        return {
+            root for root in roots if root.replace("\\", "/") in known
+        }
+
+
+def _stub_persistent_cache(monkeypatch: pytest.MonkeyPatch, cache) -> None:
+    from py.services import persistent_model_cache as persistent_model_cache_module
+
+    monkeypatch.setattr(
+        persistent_model_cache_module, "get_persistent_cache", lambda: cache
+    )
+
+
+class _LibrarySettingsService:
+    """Minimal settings service recording what the startup sync persists."""
+
+    active_library = "comfyui"
+
+    def __init__(self, library: Dict[str, Any]):
+        self._library = library
+        self.payload: Dict[str, Any] = {}
+
+    def get_libraries(self):
+        return {"comfyui": self._library}
+
+    def rename_library(self, *_):  # pragma: no cover - defensive guard
+        raise AssertionError("rename_library should not be invoked")
+
+    def delete_library(self, *_):  # pragma: no cover - defensive guard
+        raise AssertionError("delete_library should not be invoked")
+
+    def get_active_library_name(self):
+        return self.active_library
+
+    def upsert_library(self, name: str, **payload):
+        self.payload = payload
+
+
+def test_save_paths_drops_registered_directories_that_never_existed(
+    monkeypatch: pytest.MonkeyPatch, tmp_path
+):
+    """ComfyUI registers `<output>/<type>` for its save nodes unconditionally.
+
+    Those directories are not library paths when they do not exist and hold no
+    cached models: persisting them brings them back as "unavailable" roots on
+    every boot.
+    """
+    folder_paths = _setup_config_environment(monkeypatch, tmp_path)
+    unet_dir = tmp_path / "unet"
+    unet_dir.mkdir()
+    folder_paths["unet"] = [str(unet_dir)]
+    output_loras = str(tmp_path / "output" / "loras")
+    output_checkpoints = str(tmp_path / "output" / "checkpoints")
+    output_unet = str(tmp_path / "output" / "diffusion_models")
+    output_embeddings = str(tmp_path / "output" / "embeddings")
+    folder_paths["loras"].append(output_loras)
+    folder_paths["checkpoints"].append(output_checkpoints)
+    folder_paths["unet"].append(output_unet)
+    folder_paths["embeddings"].append(output_embeddings)
+
+    fake_settings = _LibrarySettingsService(
+        {
+            "folder_paths": {key: list(value) for key, value in folder_paths.items()},
+            "default_lora_root": folder_paths["loras"][0],
+            "default_checkpoint_root": folder_paths["checkpoints"][0],
+            "default_embedding_root": folder_paths["embeddings"][0],
+        }
+    )
+    monkeypatch.setattr(settings_manager_module, "settings", fake_settings)
+    cache = _FakePersistentCache()
+    _stub_persistent_cache(monkeypatch, cache)
+
+    config_module.Config()
+
+    persisted = fake_settings.payload["folder_paths"]
+    for key, never_created in (
+        ("loras", output_loras),
+        ("checkpoints", output_checkpoints),
+        ("unet", output_unet),
+        ("embeddings", output_embeddings),
+    ):
+        assert never_created.replace("\\", "/") not in persisted[key], key
+        # The real root of that key is untouched.
+        assert folder_paths[key][0].replace("\\", "/") in persisted[key], key
+    # Lora and checkpoint roots are looked up in their own model type.
+    assert [model_type for model_type, _roots in cache.queries] == [
+        "lora",
+        "checkpoint",
+        "checkpoint",
+        "embedding",
+    ]
+
+
+def test_save_paths_keeps_an_unavailable_root_that_has_cached_models(
+    monkeypatch: pytest.MonkeyPatch, tmp_path
+):
+    """A switched-off drive keeps its path: its models are still cached."""
+    folder_paths = _setup_config_environment(monkeypatch, tmp_path)
+    readable = folder_paths["loras"][0]
+    switched_off = str(tmp_path / "drive-Z" / "loras")
+    folder_paths["loras"] = [readable, switched_off]
+
+    fake_settings = _LibrarySettingsService(
+        {
+            "folder_paths": {"loras": [readable]},
+            "default_lora_root": readable,
+        }
+    )
+    monkeypatch.setattr(settings_manager_module, "settings", fake_settings)
+    _stub_persistent_cache(
+        monkeypatch, _FakePersistentCache({"lora": [switched_off]})
+    )
+
+    config_module.Config()
+
+    persisted = fake_settings.payload["folder_paths"]["loras"]
+    assert switched_off.replace("\\", "/") in persisted
+    assert readable.replace("\\", "/") in persisted
+
+
+def test_save_paths_keeps_every_root_when_the_cache_cannot_be_read(
+    monkeypatch: pytest.MonkeyPatch, tmp_path
+):
+    """No answer from the cache means no root is dropped."""
+    folder_paths = _setup_config_environment(monkeypatch, tmp_path)
+    readable = folder_paths["loras"][0]
+    unknown = str(tmp_path / "drive-Z" / "loras")
+    folder_paths["loras"] = [readable, unknown]
+
+    fake_settings = _LibrarySettingsService(
+        {
+            "folder_paths": {"loras": [readable]},
+            "default_lora_root": readable,
+        }
+    )
+    monkeypatch.setattr(settings_manager_module, "settings", fake_settings)
+    _stub_persistent_cache(
+        monkeypatch, _FakePersistentCache(error=FileNotFoundError("no cache"))
+    )
+
+    config_module.Config()
+
+    persisted = fake_settings.payload["folder_paths"]["loras"]
+    assert unknown.replace("\\", "/") in persisted
+
+
+def test_save_paths_keeps_the_root_a_default_setting_points_at(
+    monkeypatch: pytest.MonkeyPatch, tmp_path
+):
+    """An empty unavailable default root must not be dropped.
+
+    Dropping it would let the next boot "repair" the default onto another root and
+    silently retarget downloads. ``default_unet_root`` is only known from the
+    stored library (the sync resolves the lora/checkpoint/embedding ones itself),
+    so this covers the fallback to the stored value.
+    """
+    folder_paths = _setup_config_environment(monkeypatch, tmp_path)
+    unet_dir = tmp_path / "unet"
+    unet_dir.mkdir()
+    default_target = str(tmp_path / "drive-Z" / "unet")
+    folder_paths["unet"] = [str(unet_dir), default_target]
+
+    fake_settings = _LibrarySettingsService(
+        {
+            "folder_paths": {"unet": [str(unet_dir)]},
+            "default_unet_root": default_target,
+        }
+    )
+    monkeypatch.setattr(settings_manager_module, "settings", fake_settings)
+    _stub_persistent_cache(monkeypatch, _FakePersistentCache())
+
+    config_module.Config()
+
+    persisted = fake_settings.payload["folder_paths"]["unet"]
+    assert default_target.replace("\\", "/") in persisted
+    assert str(unet_dir).replace("\\", "/") in persisted

tests/routes/test_model_query_handler.py

@@ -316,6 +316,32 @@ async def test_scan_models_rejects_unknown_root():
     assert service.received_scope == "not-called"
 
 
+@pytest.mark.asyncio
+async def test_scan_models_accepts_a_root_in_the_hosts_own_spelling():
+    """Windows callers may pass a root the way ComfyUI spells it (issue #1146).
+
+    ``settings.json`` and the ComfyUI logs show ``E:\\loras`` while the live list
+    holds ``E:/loras``; both name the same directory, so a scoped scan must select
+    it instead of answering 400 "Unknown model root(s)".
+    """
+    service = ScopedScanService(
+        roots=["E:/StableDiffusion/cc_models/loras"], summary=SUMMARY
+    )
+    handler = ModelQueryHandler(service=service, logger=logging.getLogger(__name__))
+
+    for requested in (
+        "E:\\StableDiffusion\\cc_models\\loras",
+        "e:/StableDiffusion/cc_models/loras",
+    ):
+        service.received_scope = "not-called"
+        response = await handler.scan_models(
+            SimpleNamespace(query=QueryParams({"roots": [requested]}))
+        )
+
+        assert response.status == 200, requested
+        assert service.received_scope.roots == (requested,)
+
+
 @pytest.mark.asyncio
 async def test_scan_models_rejects_roots_with_full_rebuild():
     service = ScopedScanService(roots=["/mnt/a"], summary=SUMMARY)

tests/services/test_model_scanner.py

@@ -2949,3 +2949,133 @@ def test_reconcile_walk_skips_the_recipes_dir(tmp_path: Path, monkeypatch):
     assert "keep" in result.discovered_folders
     assert "recipes" not in result.discovered_folders
     assert "recipes/sub" not in result.discovered_folders
+
+
+# --- the host's path spelling (issue #1146) ---------------------------------
+
+
+def _windows_spelling(path: Path) -> str:
+    """Return a path the way ComfyUI hands it over on Windows.
+
+    ``utils/extra_config.py`` normalizes every configured model folder with
+    ``os.path.normpath``, so on Windows the configured list is all backslashes
+    while the live root list is forward-slashed.
+    """
+    return str(path).replace("/", "\\")
+
+
+async def _windows_spelling_scanner(tmp_path: Path, monkeypatch):
+    """Scanner configured with backslash roots plus a never-created output dir.
+
+    ``<output>/loras`` is what ComfyUI registers for its save nodes whether or not
+    the directory exists (``main.py`` calls ``add_model_folder_path`` with it
+    unconditionally).
+    """
+    primary = tmp_path / "primary"
+    (primary / "pack").mkdir(parents=True)
+    (primary / "pack" / "a.txt").write_text("a", encoding="utf-8")
+    never_created = tmp_path / "output" / "loras"
+
+    scanner = MultiRootDummyScanner([primary])
+    await scanner._initialize_cache()
+    monkeypatch.setattr(
+        scanner,
+        "get_configured_model_roots",
+        lambda: [_windows_spelling(primary), _windows_spelling(never_created)],
+    )
+    return scanner, primary, never_created
+
+
+@pytest.mark.asyncio
+async def test_describe_roots_folds_the_host_path_spelling(tmp_path: Path, monkeypatch):
+    """One directory is one root, whatever separator the host used."""
+    scanner, primary, _never_created = await _windows_spelling_scanner(
+        tmp_path, monkeypatch
+    )
+
+    described = scanner.describe_model_roots()
+
+    assert [entry["path"] for entry in described] == [_normalize_path(primary)]
+    assert described[0]["available"] is True
+    assert described[0]["reachable"] is True
+    assert described[0]["models"] == 1
+
+
+@pytest.mark.asyncio
+async def test_reconcile_does_not_shadow_a_backslash_configured_root(
+    tmp_path: Path, monkeypatch
+):
+    """A configured twin must not register its live root as unreachable.
+
+    ``_UnreachablePaths`` normalizes the prefixes it is given, so the backslash
+    spelling of a root the walk just read normalized to the same prefix: every
+    cached entry under it counted as "kept", which is what made the refresh toast
+    claim thousands of reachable models were inaccessible -- and what stopped
+    deleted models from ever being pruned.
+    """
+    scanner, primary, _never_created = await _windows_spelling_scanner(
+        tmp_path, monkeypatch
+    )
+    (primary / "pack" / "a.txt").unlink()
+
+    summary = await scanner._reconcile_cache()
+
+    assert summary is not None
+    assert summary["skipped_roots"] == []
+    assert summary["unavailable_paths"] == []
+    assert summary["kept_unreachable"] == 0
+    assert summary["removed"] == 1
+    assert scanner._cache.raw_data == []
+
+
+@pytest.mark.asyncio
+async def test_root_that_never_existed_is_not_reported(tmp_path: Path, monkeypatch):
+    """A registered directory that neither exists nor holds cache is not a root.
+
+    Only roots the user really configured and whose models are cached are worth an
+    offline row or a "models kept" notice.
+    """
+    primary = tmp_path / "primary"
+    (primary / "pack").mkdir(parents=True)
+    (primary / "pack" / "a.txt").write_text("a", encoding="utf-8")
+    never_created = tmp_path / "output" / "loras"
+
+    scanner = MultiRootDummyScanner([primary])
+    await scanner._initialize_cache()
+    monkeypatch.setattr(
+        scanner,
+        "get_configured_model_roots",
+        lambda: [str(primary), str(never_created)],
+    )
+
+    assert [entry["path"] for entry in scanner.describe_model_roots()] == [
+        _normalize_path(primary)
+    ]
+
+    summary = await scanner._reconcile_cache()
+
+    assert summary is not None
+    assert summary["skipped_roots"] == []
+    assert summary["kept_unreachable"] == 0
+
+
+@pytest.mark.asyncio
+async def test_scoped_scan_accepts_the_host_path_spelling(tmp_path: Path, monkeypatch):
+    """A caller may name a root the way the host spells it (issue #1146).
+
+    The Refresh menu sends back the path `/roots` rendered, but the browser
+    extension and scripts can pass what settings.json holds -- backslashes on
+    Windows -- and that must select the root rather than scan nothing.
+    """
+    primary = tmp_path / "primary"
+    (primary / "pack").mkdir(parents=True)
+    (primary / "pack" / "a.txt").write_text("a", encoding="utf-8")
+
+    scanner = MultiRootDummyScanner([primary])
+    await scanner._initialize_cache()
+
+    scope = ReconcileScope(roots=(_windows_spelling(primary),))
+    summary = await scanner._reconcile_cache(scope=scope)
+
+    assert summary is not None
+    assert summary["scanned_roots"] == [primary.name]

tests/services/test_persistent_model_cache.py

@@ -451,3 +451,100 @@ def test_get_models_missing_autov3_self_terminates_after_marking(tmp_path: Path,
     store.update_single_model('dummy', new_item, old_item=old_item)
 
     assert store.get_models_missing_autov3('dummy') == []
+
+
+# --- which roots still hold cached entries (issue #1146) --------------------
+
+
+def _cache_with_paths(tmp_path: Path, monkeypatch, entries) -> PersistentModelCache:
+    """Build a cache holding ``entries`` (``(model_type, file_path)`` pairs)."""
+
+    import sqlite3
+
+    monkeypatch.setenv('LORA_MANAGER_DISABLE_PERSISTENT_CACHE', '0')
+    db_path = tmp_path / 'roots.sqlite'
+    store = PersistentModelCache(db_path=str(db_path))
+    with sqlite3.connect(str(db_path)) as conn:
+        conn.executemany(
+            "INSERT INTO models (model_type, file_path) VALUES (?, ?)", entries
+        )
+        conn.commit()
+    return store
+
+
+def test_roots_with_cached_entries_matches_the_hosts_slash_style(
+    tmp_path: Path, monkeypatch
+) -> None:
+    """The configured root may be spelled with backslashes (Windows)."""
+
+    store = _cache_with_paths(
+        tmp_path,
+        monkeypatch,
+        [("lora", "E:/StableDiffusion/cc_models/loras/pack/a.safetensors")],
+    )
+
+    matched = store.roots_with_cached_entries(
+        "lora", ["E:\\StableDiffusion\\cc_models\\loras", "E:\\empty\\loras"]
+    )
+
+    assert matched == {"E:\\StableDiffusion\\cc_models\\loras"}
+
+
+def test_roots_with_cached_entries_compares_whole_path_segments(
+    tmp_path: Path, monkeypatch
+) -> None:
+    """``loras-extra`` and ``loras2`` are not inside ``loras``."""
+
+    store = _cache_with_paths(
+        tmp_path,
+        monkeypatch,
+        [
+            ("lora", "E:/loras-extra/a.safetensors"),
+            ("lora", "E:/loras2/b.safetensors"),
+            ("checkpoint", "E:/loras/c.safetensors"),
+        ],
+    )
+
+    assert store.roots_with_cached_entries("lora", ["E:/loras"]) == set()
+    assert store.roots_with_cached_entries("checkpoint", ["E:/loras"]) == {"E:/loras"}
+
+
+def test_roots_with_cached_entries_escapes_like_wildcards(
+    tmp_path: Path, monkeypatch
+) -> None:
+    """A directory name may contain ``_``/``%`` without becoming a wildcard."""
+
+    store = _cache_with_paths(
+        tmp_path,
+        monkeypatch,
+        [("lora", "E:/myXloras/a.safetensors"), ("lora", "E:/100%/a.safetensors")],
+    )
+
+    assert store.roots_with_cached_entries("lora", ["E:/my_loras"]) == set()
+    assert store.roots_with_cached_entries("lora", ["E:/100x"]) == set()
+    assert store.roots_with_cached_entries("lora", ["E:/100%"]) == {"E:/100%"}
+
+
+def test_roots_with_cached_entries_raises_when_unknown(
+    tmp_path: Path, monkeypatch
+) -> None:
+    """No cache, no answer: the caller must not drop roots on a guess."""
+
+    monkeypatch.setenv('LORA_MANAGER_DISABLE_PERSISTENT_CACHE', '1')
+    disabled = PersistentModelCache(db_path=str(tmp_path / 'disabled.sqlite'))
+    with pytest.raises(RuntimeError):
+        disabled.roots_with_cached_entries("lora", ["E:/loras"])
+
+    monkeypatch.setenv('LORA_MANAGER_DISABLE_PERSISTENT_CACHE', '0')
+    missing = PersistentModelCache(db_path=str(tmp_path / 'missing.sqlite'))
+    (tmp_path / 'missing.sqlite').unlink()
+    with pytest.raises(FileNotFoundError):
+        missing.roots_with_cached_entries("lora", ["E:/loras"])
+
+
+def test_roots_with_cached_entries_without_candidates(tmp_path: Path, monkeypatch) -> None:
+    monkeypatch.setenv('LORA_MANAGER_DISABLE_PERSISTENT_CACHE', '0')
+    store = PersistentModelCache(db_path=str(tmp_path / 'empty.sqlite'))
+
+    assert store.roots_with_cached_entries("lora", []) == set()
+    assert store.roots_with_cached_entries("lora", ["", "   "]) == set()

tests/utils/test_root_paths.py

@@ -0,0 +1,69 @@
+import os
+
+import pytest
+
+from py.utils.root_paths import normalize_root_identity
+
+
+def test_folds_windows_and_posix_separators():
+    """ComfyUI's normpath output and LoRA Manager's forward slashes agree."""
+
+    assert normalize_root_identity("E:\\StableDiffusion\\cc_models\\loras") == (
+        normalize_root_identity("E:/StableDiffusion/cc_models/loras")
+    )
+
+
+def test_folds_drive_letter_case_on_every_platform():
+    """A drive letter is case-insensitive even where the filesystem is not."""
+
+    assert normalize_root_identity("E:/models/loras") == normalize_root_identity(
+        "e:/models/loras"
+    )
+    assert normalize_root_identity("E:\\models\\loras") == normalize_root_identity(
+        "e:/MODELS/loras"
+    )
+
+
+def test_folds_trailing_and_redundant_separators():
+    assert normalize_root_identity("E:/models/loras/") == normalize_root_identity(
+        "E:/models/loras"
+    )
+    assert normalize_root_identity("E:/models/other/../loras") == (
+        normalize_root_identity("E:/models/loras")
+    )
+
+
+def test_keeps_posix_case_significant():
+    """Only Windows compares whole paths case-insensitively."""
+
+    if os.name == "nt":
+        assert normalize_root_identity("C:/Models/Loras") == (
+            normalize_root_identity("c:/models/loras")
+        )
+    else:
+        assert normalize_root_identity("/data/Loras") != normalize_root_identity(
+            "/data/loras"
+        )
+
+
+def test_folds_whole_path_case_on_windows(monkeypatch):
+    """The Windows branch is exercised on every platform."""
+
+    monkeypatch.setattr(os, "name", "nt")
+
+    assert normalize_root_identity("C:/Models/Loras") == normalize_root_identity(
+        "c:/models/loras"
+    )
+    assert normalize_root_identity("C:\\Models\\Loras\\") == "c:/models/loras"
+
+
+def test_never_resolves_symlinks_or_abspath():
+    """Business paths stay business paths: only the spelling is folded."""
+
+    assert normalize_root_identity("./models/loras") == "models/loras"
+    assert normalize_root_identity("/srv/link/loras") == "/srv/link/loras"
+
+
+@pytest.mark.parametrize("value", ["", "   ", None, 42])
+def test_blank_inputs_have_no_identity(value):
+    assert normalize_root_identity(value) == ""