Fix ~790 basedpyright errors across the test suite:
- Type stub subclasses of real production classes with super().__init__()
- Add missing generic type arguments and Dict[str, Any] annotations
- Add None guards before subscript/member access
- Adapt tests to production API changes (removed dead handlers,
PersistentModelCache.get_default, _i18n_filter_added location)
Commit 9a0d866b changed _strip_fenced_code_blocks to preserve bash/shell
code blocks (they carry CLI setup and trigger-word metadata signal).
Update the two affected tests to expect bash content in the output
instead of asserting it is stripped.
- Rename test_bash_code_block_stripped → test_bash_code_block_preserved
- Update assertions: expect 'pip install' in result
- Rename py/agent_cli/ -> py/metadata_ops/ (module was never agent-related)
- Rename tests/agent_cli/ -> tests/metadata_ops/
- Remove 9 low-value/debug INFO log points across agent_handlers.py,
agent_service.py, llm_service.py, and metadata_ops/__init__.py
- Keep LLM raw response at DEBUG level for diagnostics
- Consolidate per-model progress + LLM result into single concise
log line with basename instead of full path
- Update package/class/method docstrings to clarify this is a
pipeline infrastructure, not a true agent loop
